PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_002900_doao.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 665aa    MW: 73185.2 Da    PI: 7.075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_002900_doao.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.1e-13494540455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Bv1_002900_doao.t1 494 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 540
                         799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.9E-5055242IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13490539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-18493552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-14493544No hitNo description
Gene3DG3DSA:4.10.280.103.3E-18494554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10494540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-17496545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MTNTELGMGG GVVWNEEDKA MIASILGTRA FDYLISSPFT AETSLVSFEN NENIQNKLSD  60
LVERPNASNF SWNYGFFWQI SRAKSGEVVL SWGDGYCREP REGEESEATR ILNFRLEDES  120
HQKIRKRVLQ KLNTLFGGSD DDNLACRLDR VTDMEMFFLV SMYFSFPRGE GGPGSCFVSG  180
KHVWESDLLR SKSDYCVRSF LAKSAGIQTV ILIPTEFGVV ELGSVRAIGE NHDVLKALKF  240
AFASPPVVRP KPTPVFPVVV HKIEEEDAPA LTPSPAPAPA PVRSPAPAPA RSPTPAPAPA  300
PAAVPASVPT TSPVPVSGPF SNVRLVDRGL DGVPKIFGQN LNTASRPPFR EKLAVKRMED  360
RHWDPYANGN KLSFAGQSPR NGLHGSNWAN IPGVKHATTT ELYSPQNTRL QEYVNGIRSE  420
YRLNQFHQQK PVQMEIDFSG ATSRPTVISQ PGSAESEHSD AEVSGRDDRA GPSDDRKPRK  480
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAISYITELQ  540
KKLKDMEADR EKHNSTSKDT TSGTEANSVA DTQVQAPDVE VQAMHDEVVV RVSCPLDSHP  600
VARVIRAFKD SEINIVDSKL AAGTDTVFHT FVIKSQSSEQ LTKEKLLSAF SHESKPLQAP  660
SSTGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A9e-24502425192Transcription factor MYC3
4rs9_A9e-24502425192Transcription factor MYC3
4rqw_B9e-24502425192Transcription factor MYC3
4rqw_A9e-24502425192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475483RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696336.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ51e-108BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0J8D3C60.0A0A0J8D3C6_BETVU; Uncharacterized protein
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-110bHLH family protein